STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL50877.1PFAM: Transketolase central region; Transketolase domain protein; KEGG: bbt:BBta_5637 transketolase subunit B. (309 aa)    
Predicted Functional Partners:
EFL50878.1
PFAM: Transketolase domain protein; KEGG: bbt:BBta_5636 transketolase subunit A.
 0.999
EFL50055.1
TIGRFAM: ribulose-phosphate 3-epimerase; KEGG: dma:DMR_38890 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
 
 0.921
EFL49337.1
Transaldolase; KEGG: dma:DMR_44980 transaldolase family protein; PFAM: Transaldolase.
 
 
 0.912
EFL49744.1
TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; KEGG: dma:DMR_21090 ribose-5-phosphate isomerase B; PFAM: Ribose/galactose isomerase.
 
 
 0.887
EFL49338.1
TIGRFAM: ribose 5-phosphate isomerase; KEGG: dma:DMR_44990 ribose-5-phosphate isomerase A; PFAM: Ribose 5-phosphate isomerase.
    
 0.848
EFL50876.1
KEGG: bra:BRADO5172 hypothetical protein.
       0.809
EFL49743.1
Transketolase; KEGG: dma:DMR_21080 transketolase; TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region; Belongs to the transketolase family.
  
 
0.798
EFL50875.1
PFAM: Radical SAM domain protein; KEGG: mag:amb0070 Fe-S oxidoreductase.
  
    0.786
EFL50874.1
PFAM: Methyltransferase type 11; KEGG: mag:amb0071 SAM-dependent methyltransferase.
       0.782
EFL53073.1
KEGG: dma:DMR_20070 pyruvate-flavodoxin oxidoreductase; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase; Pyruvate-flavodoxin oxidoreductase, EKR domain; 4Fe-4S ferredoxin iron-sulfur binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
   
 
 0.762
Your Current Organism:
Desulfovibrio fructosivorans
NCBI taxonomy Id: 596151
Other names: D. fructosivorans JJ, Desulfovibrio fructosivorans ATCC 49200, Desulfovibrio fructosivorans DSM 3604, Desulfovibrio fructosivorans JJ, Desulfovibrio fructosivorans str. JJ, Desulfovibrio fructosivorans strain JJ, Desulfovibrio fructosovorans JJ
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