STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL49730.1Cell wall hydrolase/autolysin; KEGG: dma:DMR_17540 N-acetylmuramoyl-L-alanine amidase family protein; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin. (250 aa)    
Predicted Functional Partners:
EFL53051.1
PFAM: Rhomboid family protein; KEGG: dma:DMR_23600 rhomboid family protein.
 
   0.846
rlpA
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
  
 0.846
EFL51877.1
PFAM: Rhomboid family protein; KEGG: dma:DMR_19850 hypothetical membrane protein.
  
   0.820
EFL51179.1
KEGG: ppd:Ppro_1941 hypothetical protein.
    
   0.809
EFL50515.1
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
    
   0.809
EFL49255.1
KEGG: dma:DMR_39000 putative transglycosylase; PFAM: Lytic transglycosylase catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM.
    
 0.757
EFL53212.1
Cell wall hydrolase/autolysin; KEGG: dma:DMR_21740 N-acetylmuramoyl-L-alanine amidase family protein; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin.
  
  
  0.718
EFL52595.1
PFAM: Lytic transglycosylase catalytic; KEGG: dma:DMR_42530 putative transglycosylase.
    
 0.703
EFL52759.1
N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; KEGG: dma:DMR_43330 putative N-acetylmuramoyl-L-alanine amidase; SMART: cell wall hydrolase/autolysin.
  
  
 
0.657
EFL51981.1
PFAM: NLP/P60 protein; KEGG: dma:DMR_23060 NlpC/P60 family protein.
  
 
 0.652
Your Current Organism:
Desulfovibrio fructosivorans
NCBI taxonomy Id: 596151
Other names: D. fructosivorans JJ, Desulfovibrio fructosivorans ATCC 49200, Desulfovibrio fructosivorans DSM 3604, Desulfovibrio fructosivorans JJ, Desulfovibrio fructosivorans str. JJ, Desulfovibrio fructosivorans strain JJ, Desulfovibrio fructosovorans JJ
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.