STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL49677.1PFAM: protein of unknown function UPF0066; KEGG: dma:DMR_43460 hypothetical protein. (164 aa)    
Predicted Functional Partners:
EFL49674.1
KEGG: dma:DMR_43490 hypothetical protein.
     
 0.532
EFL49676.1
PFAM: cobalamin synthesis protein P47K; KEGG: dma:DMR_43470 putative hydrogenase accessory protein.
       0.528
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
    
  0.519
EFL49675.1
KEGG: dma:DMR_43480 putative ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.511
EFL51659.1
PFAM: ketose-bisphosphate aldolase class-II; KEGG: dma:DMR_45520 ketose-bisphosphate aldolase class-II family protein.
    
  0.510
EFL53238.1
PFAM: formylmethanofuran dehydrogenase subunit E region; KEGG: dma:DMR_21490 formylmethanofuran dehydrogenase subunit E family protein.
 
  
  0.503
EFL52897.1
PFAM: CMP/dCMP deaminase zinc-binding; KEGG: dma:DMR_05630 putative dCMP deaminase.
   
 
  0.500
thyX
Thymidylate synthase, flavin-dependent; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant.
    
  0.454
EFL52872.1
Formylmethanofuran dehydrogenase subunit E region; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
    
  0.449
EFL49678.1
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dma:DMR_43450 GGDEF domain protein; SMART: GGDEF domain containing protein.
       0.444
Your Current Organism:
Desulfovibrio fructosivorans
NCBI taxonomy Id: 596151
Other names: D. fructosivorans JJ, Desulfovibrio fructosivorans ATCC 49200, Desulfovibrio fructosivorans DSM 3604, Desulfovibrio fructosivorans JJ, Desulfovibrio fructosivorans str. JJ, Desulfovibrio fructosivorans strain JJ, Desulfovibrio fructosovorans JJ
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