STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIG55797.1PFAM: Uncharacterized protein conserved in bacteria (DUF2136). (98 aa)    
Predicted Functional Partners:
EIG55796.1
Putative transcription regulator containing HTH domain; PFAM: Helix-turn-helix.
 
 
 0.998
EIG55798.1
PFAM: Bacterial lipid A biosynthesis acyltransferase.
       0.509
EIG55799.1
Fe-S oxidoreductase; PFAM: Radical SAM superfamily; B12 binding domain; overlaps another CDS with the same product name.
       0.509
EIG55800.1
Fe-S oxidoreductase; PFAM: Radical SAM superfamily; B12 binding domain; overlaps another CDS with the same product name.
       0.509
EIG55795.1
DNA-binding protein, excisionase family.
       0.423
EIG55802.1
Site-specific recombinase, DNA invertase Pin; PFAM: Resolvase, N terminal domain; Helix-turn-helix domain of resolvase.
     
 0.414
EIG54663.1
Growth inhibitor; PFAM: PemK-like protein; manually curated.
  
   
 0.413
EIG54659.1
Growth inhibitor; PFAM: PemK-like protein; manually curated.
  
   
 0.411
Your Current Organism:
Desulfovibrio sp. U5L
NCBI taxonomy Id: 596152
Other names: D. sp. U5L
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.