STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIG52005.1Putative permease; PFAM: EamA-like transporter family. (300 aa)    
Predicted Functional Partners:
EIG53266.1
Export-related chaperone CsaA; PFAM: Putative tRNA binding domain.
  
   0.602
EIG52004.1
PFAM: FlaG protein.
       0.533
EIG52006.1
Hypothetical protein.
       0.509
EIG54275.1
succinyl-CoA synthetase, alpha subunit; PFAM: CoA binding domain; CoA-ligase; ATP-grasp domain; TIGRFAM: succinyl-CoA synthetase, beta subunit; succinyl-CoA synthetase, alpha subunit.
   
    0.499
EIG54213.1
PFAM: Aminotransferase class-III; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
  0.491
EIG53018.1
Uncharacterized membrane protein, possible Na+ channel or pump; PFAM: Protein of unknown function (DUF554).
  
     0.468
EIG53545.1
DMT(drug/metabolite transporter) superfamily permease; PFAM: EamA-like transporter family.
 
     0.456
EIG53020.1
4-aminobutyrate aminotransferase family protein; PFAM: Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
  0.424
EIG53544.1
Xaa-Pro aminopeptidase; PFAM: Metallopeptidase family M24; Creatinase/Prolidase N-terminal domain.
    
 0.419
EIG55259.1
Xaa-Pro aminopeptidase; PFAM: Metallopeptidase family M24; Creatinase/Prolidase N-terminal domain.
    
 0.419
Your Current Organism:
Desulfovibrio sp. U5L
NCBI taxonomy Id: 596152
Other names: D. sp. U5L
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.