Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EIG52195.1 | EIG52278.1 | DesU5LDRAFT_0489 | DesU5LDRAFT_0573 | Bacterial nucleoid DNA-binding protein; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | Flagellar motor switch protein FliG; PFAM: MgtE intracellular N domain; FliG C-terminal domain. | 0.739 |
| EIG52195.1 | EIG52951.1 | DesU5LDRAFT_0489 | DesU5LDRAFT_1255 | Bacterial nucleoid DNA-binding protein; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein. | 0.739 |
| EIG52195.1 | EIG53014.1 | DesU5LDRAFT_0489 | DesU5LDRAFT_1319 | Bacterial nucleoid DNA-binding protein; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | PFAM: Surface presentation of antigens (SPOA); Flagellar motor switch protein FliM. | 0.739 |
| EIG52195.1 | EIG53928.1 | DesU5LDRAFT_0489 | DesU5LDRAFT_2262 | Bacterial nucleoid DNA-binding protein; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | PFAM: Bacterial DNA-binding protein; Belongs to the bacterial histone-like protein family. | 0.911 |
| EIG52195.1 | EIG55356.1 | DesU5LDRAFT_0489 | DesU5LDRAFT_3738 | Bacterial nucleoid DNA-binding protein; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | Putative transcriptional regulator; PFAM: MerR family regulatory protein. | 0.889 |
| EIG52195.1 | acpP | DesU5LDRAFT_0489 | DesU5LDRAFT_1131 | Bacterial nucleoid DNA-binding protein; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.850 |
| EIG52195.1 | cas1 | DesU5LDRAFT_0489 | DesU5LDRAFT_2986 | Bacterial nucleoid DNA-binding protein; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | CRISPR-associated endonuclease Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. | 0.748 |
| EIG52195.1 | clpS | DesU5LDRAFT_0489 | DesU5LDRAFT_1738 | Bacterial nucleoid DNA-binding protein; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | Hypothetical protein; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. | 0.756 |
| EIG52195.1 | csrA | DesU5LDRAFT_0489 | DesU5LDRAFT_2455 | Bacterial nucleoid DNA-binding protein; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | Carbon storage regulator CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | 0.850 |
| EIG52195.1 | rpmI | DesU5LDRAFT_0489 | DesU5LDRAFT_3743 | Bacterial nucleoid DNA-binding protein; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | PFAM: Ribosomal protein L35; TIGRFAM: ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.722 |
| EIG52278.1 | EIG52195.1 | DesU5LDRAFT_0573 | DesU5LDRAFT_0489 | Flagellar motor switch protein FliG; PFAM: MgtE intracellular N domain; FliG C-terminal domain. | Bacterial nucleoid DNA-binding protein; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.739 |
| EIG52278.1 | EIG52951.1 | DesU5LDRAFT_0573 | DesU5LDRAFT_1255 | Flagellar motor switch protein FliG; PFAM: MgtE intracellular N domain; FliG C-terminal domain. | Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein. | 0.972 |
| EIG52278.1 | EIG53014.1 | DesU5LDRAFT_0573 | DesU5LDRAFT_1319 | Flagellar motor switch protein FliG; PFAM: MgtE intracellular N domain; FliG C-terminal domain. | PFAM: Surface presentation of antigens (SPOA); Flagellar motor switch protein FliM. | 0.999 |
| EIG52278.1 | EIG53928.1 | DesU5LDRAFT_0573 | DesU5LDRAFT_2262 | Flagellar motor switch protein FliG; PFAM: MgtE intracellular N domain; FliG C-terminal domain. | PFAM: Bacterial DNA-binding protein; Belongs to the bacterial histone-like protein family. | 0.752 |
| EIG52278.1 | csrA | DesU5LDRAFT_0573 | DesU5LDRAFT_2455 | Flagellar motor switch protein FliG; PFAM: MgtE intracellular N domain; FliG C-terminal domain. | Carbon storage regulator CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | 0.599 |
| EIG52951.1 | EIG52195.1 | DesU5LDRAFT_1255 | DesU5LDRAFT_0489 | Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein. | Bacterial nucleoid DNA-binding protein; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.739 |
| EIG52951.1 | EIG52278.1 | DesU5LDRAFT_1255 | DesU5LDRAFT_0573 | Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein. | Flagellar motor switch protein FliG; PFAM: MgtE intracellular N domain; FliG C-terminal domain. | 0.972 |
| EIG52951.1 | EIG53014.1 | DesU5LDRAFT_1255 | DesU5LDRAFT_1319 | Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein. | PFAM: Surface presentation of antigens (SPOA); Flagellar motor switch protein FliM. | 0.978 |
| EIG52951.1 | EIG53928.1 | DesU5LDRAFT_1255 | DesU5LDRAFT_2262 | Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein. | PFAM: Bacterial DNA-binding protein; Belongs to the bacterial histone-like protein family. | 0.752 |
| EIG52951.1 | csrA | DesU5LDRAFT_1255 | DesU5LDRAFT_2455 | Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein. | Carbon storage regulator CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | 0.441 |
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