rpsT protein (Desulfovibrio sp. U5L) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rpsT

Ribosomal protein S20; Binds directly to 16S ribosomal RNA. (89 aa)

Predicted Functional Partners:

rpmB

0.992

rplU

0.992

rplM

0.992

rpmF

0.991

rpmH

0.991

rpsU

0.991

rpsR

0.991

EIG54096.1

0.991

rpsO

0.991

rpsP

0.991

Your Current Organism:

Desulfovibrio sp. U5L

NCBI taxonomy Id: 596152
Other names: D. sp. U5L

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EIG54096.1	rplM	DesU5LDRAFT_2439	DesU5LDRAFT_3275	PFAM: Ribosomal protein L31; TIGRFAM: ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.	Ribosomal protein L13, bacterial type; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.991
EIG54096.1	rplU	DesU5LDRAFT_2439	DesU5LDRAFT_2896	PFAM: Ribosomal protein L31; TIGRFAM: ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.991
EIG54096.1	rpmB	DesU5LDRAFT_2439	DesU5LDRAFT_1137	PFAM: Ribosomal protein L31; TIGRFAM: ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.	PFAM: Ribosomal L28 family; Belongs to the bacterial ribosomal protein bL28 family.	0.991
EIG54096.1	rpmF	DesU5LDRAFT_2439	DesU5LDRAFT_1135	PFAM: Ribosomal protein L31; TIGRFAM: ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.	PFAM: Ribosomal L32p protein family; Belongs to the bacterial ribosomal protein bL32 family.	0.991
EIG54096.1	rpmH	DesU5LDRAFT_2439	DesU5LDRAFT_1197	PFAM: Ribosomal protein L31; TIGRFAM: ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.	Ribosomal protein L34, bacterial type; PFAM: Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.978
EIG54096.1	rpsO	DesU5LDRAFT_2439	DesU5LDRAFT_2474	PFAM: Ribosomal protein L31; TIGRFAM: ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.991
EIG54096.1	rpsP	DesU5LDRAFT_2439	DesU5LDRAFT_2823	PFAM: Ribosomal protein L31; TIGRFAM: ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.	PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.992
EIG54096.1	rpsR	DesU5LDRAFT_2439	DesU5LDRAFT_2281	PFAM: Ribosomal protein L31; TIGRFAM: ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.	Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.992
EIG54096.1	rpsT	DesU5LDRAFT_2439	DesU5LDRAFT_1814	PFAM: Ribosomal protein L31; TIGRFAM: ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.	Ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.991
EIG54096.1	rpsU	DesU5LDRAFT_2439	DesU5LDRAFT_2057	PFAM: Ribosomal protein L31; TIGRFAM: ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.	PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.	0.989
rplM	EIG54096.1	DesU5LDRAFT_3275	DesU5LDRAFT_2439	Ribosomal protein L13, bacterial type; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	PFAM: Ribosomal protein L31; TIGRFAM: ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.	0.991
rplM	rplU	DesU5LDRAFT_3275	DesU5LDRAFT_2896	Ribosomal protein L13, bacterial type; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.992
rplM	rpmB	DesU5LDRAFT_3275	DesU5LDRAFT_1137	Ribosomal protein L13, bacterial type; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	PFAM: Ribosomal L28 family; Belongs to the bacterial ribosomal protein bL28 family.	0.992
rplM	rpmF	DesU5LDRAFT_3275	DesU5LDRAFT_1135	Ribosomal protein L13, bacterial type; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	PFAM: Ribosomal L32p protein family; Belongs to the bacterial ribosomal protein bL32 family.	0.991
rplM	rpmH	DesU5LDRAFT_3275	DesU5LDRAFT_1197	Ribosomal protein L13, bacterial type; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L34, bacterial type; PFAM: Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.990
rplM	rpsO	DesU5LDRAFT_3275	DesU5LDRAFT_2474	Ribosomal protein L13, bacterial type; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.994
rplM	rpsP	DesU5LDRAFT_3275	DesU5LDRAFT_2823	Ribosomal protein L13, bacterial type; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.994
rplM	rpsR	DesU5LDRAFT_3275	DesU5LDRAFT_2281	Ribosomal protein L13, bacterial type; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.993
rplM	rpsT	DesU5LDRAFT_3275	DesU5LDRAFT_1814	Ribosomal protein L13, bacterial type; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.992
rplM	rpsU	DesU5LDRAFT_3275	DesU5LDRAFT_2057	Ribosomal protein L13, bacterial type; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.	0.990