STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIG53863.1Cell wall-associated hydrolase, invasion-associated protein; PFAM: NlpC/P60 family. (229 aa)    
Predicted Functional Partners:
EIG53864.1
Hypothetical protein.
     
 0.789
EIG52170.1
Flagellar basal body-associated protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
   
   0.725
EIG53936.1
Flagellar basal body-associated protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
   
   0.725
EIG54034.1
Hypothetical protein.
  
  
 0.437
EIG52560.1
PFAM: D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
    
 0.434
EIG53364.1
PFAM: D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
    
 0.434
EIG52900.1
Tetratricopeptide repeat protein,LysM domain-containing protein; PFAM: Tetratricopeptide repeat; LysM domain.
   
  0.429
lipA
Lipoate synthase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.
       0.429
EIG53861.1
PFAM: Mitochondrial small ribosomal subunit Rsm22.
       0.427
EIG53862.1
Hypothetical protein.
       0.427
Your Current Organism:
Desulfovibrio sp. U5L
NCBI taxonomy Id: 596152
Other names: D. sp. U5L
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.