STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIG53866.1PFAM: Acyltransferase family. (369 aa)    
Predicted Functional Partners:
EIG53865.1
Metal-dependent hydrolase, beta-lactamase superfamily III.
 
     0.610
EIG53328.1
Micrococcal nuclease-like nuclease; PFAM: Staphylococcal nuclease homologue; manually curated.
   
  
 0.485
EIG54804.1
EAL domain-containing protein; PFAM: EAL domain.
  
    0.450
EIG52931.1
Diguanylate cyclase (GGDEF) domain-containing protein; PFAM: EAL domain; GGDEF domain.
  
    0.443
EIG54667.1
Hypothetical protein.
   
    0.426
EIG52456.1
Putative carbamoyl transferase, NodU family; PFAM: Carbamoyltransferase.
    
  0.401
Your Current Organism:
Desulfovibrio sp. U5L
NCBI taxonomy Id: 596152
Other names: D. sp. U5L
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.