STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIG54034.1Hypothetical protein. (2390 aa)    
Predicted Functional Partners:
EIG54032.1
Hypothetical protein.
  
    0.889
EIG54033.1
Hypothetical protein.
       0.809
EIG54031.1
PFAM: S23 ribosomal protein; manually curated.
       0.787
EIG54035.1
PFAM: Bacteriophage protein of unknown function (DUF646).
       0.757
EIG54029.1
Hypothetical protein.
  
    0.694
EIG52093.1
PFAM: Phage Tail Collar Domain.
  
  
 0.608
EIG54036.1
PFAM: Restriction endonuclease.
       0.546
EIG53613.1
Bacteriophage tail assembly protein; PFAM: Phage terminase large subunit (GpA).
  
    0.505
EIG54059.1
Bacteriophage tail assembly protein; PFAM: Phage terminase large subunit (GpA).
  
    0.505
EIG54661.1
Hypothetical protein; PFAM: Eukaryotic and archaeal DNA primase small subunit; Type III restriction enzyme, res subunit.
  
    0.452
Your Current Organism:
Desulfovibrio sp. U5L
NCBI taxonomy Id: 596152
Other names: D. sp. U5L
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.