STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIG54723.1ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter. (236 aa)    
Predicted Functional Partners:
EIG52595.1
ABC-type antimicrobial peptide transport system, permease component; PFAM: Predicted permease.
 0.990
EIG54724.1
ABC-type antimicrobial peptide transport system, permease component; PFAM: Predicted permease; TIGRFAM: DevC protein.
 
 0.985
EIG54233.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
 
 0.954
EIG54231.1
ABC-type antimicrobial peptide transport system, permease component; PFAM: Predicted permease.
  
 0.942
EIG55025.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
 
 0.937
EIG53809.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
 
 0.930
EIG55024.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
 
 0.924
EIG55619.1
PFAM: Predicted permease; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family.
  
 0.921
EIG54722.1
Multidrug resistance efflux pump; TIGRFAM: ABC exporter membrane fusion protein, DevB family.
 
 
 0.868
EIG55021.1
TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.676
Your Current Organism:
Desulfovibrio sp. U5L
NCBI taxonomy Id: 596152
Other names: D. sp. U5L
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.