STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIG54770.1Type II secretory pathway, component PulD; PFAM: Secretin and TonB N terminus short domain; Bacterial type II/III secretion system short domain; Bacterial type II and III secretion system protein. (629 aa)    
Predicted Functional Partners:
EIG54773.1
PFAM: Competence protein A.
 
 
 0.987
EIG54767.1
Type II secretory pathway, component PulF; PFAM: Bacterial type II secretion system protein F domain.
 
 
 
 0.983
EIG54768.1
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; PFAM: GSPII_E N-terminal domain; Type II/IV secretion system protein.
 
 
 
 0.983
EIG53685.1
LysM domain-containing protein; PFAM: LysM domain.
   
 
 0.930
EIG54769.1
Type II secretory pathway, component ExeA (predicted ATPase).
 
   
 0.845
EIG52608.1
GSPII_E-like protein; PFAM: GSPII_E N-terminal domain; Domain of unknown function DUF.
   
 
 0.823
EIG52609.1
Hypothetical protein.
   
 
 0.823
EIG54775.1
PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT.
 
   
 0.795
EIG54776.1
PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT.
 
   
 0.786
EIG55096.1
Prepilin signal peptidase PulO-like peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.728
Your Current Organism:
Desulfovibrio sp. U5L
NCBI taxonomy Id: 596152
Other names: D. sp. U5L
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.