Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AEB82477.1PFAM: Nucleoside recognition; KEGG: ajs:Ajs_0012 nucleoside recognition domain-containing protein. (417 aa)    
Predicted Functional Partners:
AEB82476.1
Exonuclease RdgC; May be involved in recombination. Belongs to the RdgC family.
       0.743
AEB83501.1
PFAM: Peptidase M50; KEGG: dia:Dtpsy_2770 peptidase M50.
  
  
 0.718
AEB82777.1
Beta-lactamase; PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal; Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal; KEGG: ajs:Ajs_0272 penicillin-binding protein 6; SMART: Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal; Belongs to the peptidase S11 family.
  
  
 0.706
AEB85462.1
PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal; KEGG: ajs:Ajs_1775 murein-dd-endopeptidase; Belongs to the peptidase S11 family.
  
  
 0.706
AEB83625.1
SpoVR family protein; PFAM: Sporulation stage V, protein R; KEGG: dac:Daci_2329 SpoVR family protein.
  
  
 0.549
AEB84338.1
Transcriptional regulator, AbrB family; TIGRFAM: Transcription regulator AbrB; PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: dac:Daci_4189 AbrB family transcriptional regulator; SMART: Transcription regulator AbrB/SpoV, predicted.
     
 0.462
AEB83639.1
KEGG: dia:Dtpsy_2653 hypothetical protein.
 
   
 0.461
AEB82475.1
PFAM: Domain of unknown function DUF1520; KEGG: ajs:Ajs_0007 hypothetical protein.
       0.449
AEB83135.1
TIGRFAM: Pyridoxal-dependent decarboxylase, exosortase system type 1 associated; KEGG: rfr:Rfer_0700 Orn/DAP/Arg decarboxylase 2; PFAM: Orn/DAP/Arg decarboxylase 2, C-terminal; Orn/DAP/Arg decarboxylase 2, N-terminal.
  
  
 0.433
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
  
 0.433
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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