Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB82496.1PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: dia:Dtpsy_0047 lysine exporter protein (LysE/YggA). (204 aa)    
Predicted Functional Partners:
AEB82497.1
PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: dia:Dtpsy_0048 cobyrinic acid ac-diamide synthase.
  
    0.838
AEB86266.1
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ajs:Ajs_3544 lysine exporter protein LysE/YggA.
 
  
 0.800
mnmG
Glucose inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
       0.720
rsmG
Methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.
       0.720
AEB82494.1
KEGG: pct:PC1_0787 hypothetical protein.
       0.651
AEB82498.1
PFAM: Protein of unknown function DUF1234; KEGG: ajs:Ajs_0030 hypothetical protein.
       0.577
AEB82499.1
TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: aav:Aave_0056 chromosome segregation DNA-binding protein; SMART: ParB-like nuclease; Belongs to the ParB family.
       0.577
AEB82500.1
KEGG: ajs:Ajs_0032 methyltransferase type 12.
       0.503
AEB82492.1
PFAM: NADPH-dependent FMN reductase; KEGG: dia:Dtpsy_0044 NADPH-dependent FMN reductase.
       0.494
AEB82491.1
Protein of unknown function UPF0153; PFAM: Uncharacterised protein family UPF0153; KEGG: dia:Dtpsy_0043 protein of unknown function UPF0153.
       0.491
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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