Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
AEB82606.1KEGG: reh:H16_B1474 extra-cytoplasmic solute receptor. (333 aa)    
Predicted Functional Partners:
AEB86254.1
KEGG: bpt:Bpet0051 putative secreted protein.
  
     0.762
AEB82607.1
Amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation; manually curated; KEGG: reu:Reut_B4300 peptidase M20D, amidohydrolase; TIGRFAM: Peptidase M20D, amidohydrolase.
       0.718
AEB86064.1
KEGG: dia:Dtpsy_2746 protein of unknown function DUF1468.
 
  
 0.529
AEB86063.1
PFAM: Protein of unknown function DUF112, transmembrane; KEGG: ajs:Ajs_3411 hypothetical protein.
 
  
 0.522
AEB82608.1
PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal; KEGG: ajs:Ajs_0128 hypothetical protein.
 
     0.488
AEB82609.1
Thiolase domain-containing protein; PFAM: Thiolase, C-terminal; KEGG: ajs:Ajs_0129 thiolase.
 
     0.488
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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