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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB82762.1Hypothetical protein; KEGG: cti:RALTA_B0858 conserved hypothetical protein; UPF0065. (329 aa)    
Predicted Functional Partners:
AEB86063.1
PFAM: Protein of unknown function DUF112, transmembrane; KEGG: ajs:Ajs_3411 hypothetical protein.
 
  
 0.850
AEB84486.1
PFAM: Protein of unknown function DUF112, transmembrane; KEGG: ajs:Ajs_1644 hypothetical protein.
 
  
 0.843
AEB82763.1
KEGG: mmi:MMAR_5403 ribonuclease activity regulator protein RraA; TIGRFAM: Ribonuclease E inhibitor RraA; PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase.
       0.774
AEB82761.1
Aconitate hydratase domain-containing protein; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel; KEGG: cti:RALTA_B0856 putative hydrolyase.
       0.660
AEB82760.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bph:Bphy_6198 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.471
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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