Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AEB82819.1KEGG: dia:Dtpsy_0312 hypothetical protein. (155 aa)    
Predicted Functional Partners:
AEB82820.1
PFAM: Protein of unknown function DUF2944; KEGG: ajs:Ajs_0319 hypothetical protein.
 
     0.740
AEB86614.1
KEGG: dia:Dtpsy_3161 hypothetical protein.
  
     0.660
AEB83344.1
KEGG: aav:Aave_3628 hypothetical protein.
 
     0.615
AEB82675.1
KEGG: ajs:Ajs_0183 hypothetical protein.
  
    0.566
AEB86613.1
KEGG: dia:Dtpsy_3160 domain of unknown function DUF1745; PFAM: FIST domain, N-terminal; FIST C domain; SMART: FIST domain, N-terminal.
  
     0.540
AEB82817.1
PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_0315 hypothetical protein.
       0.537
AEB82818.1
LemA family protein; PFAM: LemA; KEGG: aav:Aave_0381 LemA family protein.
       0.537
AEB82816.1
PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_0314 hypothetical protein.
       0.520
AEB82549.1
PFAM: Cupin 2, conserved barrel; KEGG: aav:Aave_0177 cupin 2 domain-containing protein.
 
     0.501
AEB83820.1
PFAM: Protein of unknown function DUF2065; KEGG: ajs:Ajs_1179 hypothetical protein.
  
     0.425
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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