STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB82841.1PFAM: Integrase, catalytic core; KEGG: tin:Tint_1916 integrase catalytic region. (277 aa)    
Predicted Functional Partners:
AEB82842.1
PFAM: Transposase IS3/IS911family; KEGG: pna:Pnap_4650 transposase IS3/IS911 family protein.
  
 0.927
AEB85054.1
PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_1457 transposase IS3/IS911 family protein.
  
 0.800
AEB86028.1
PFAM: Transposase IS3/IS911family; KEGG: pna:Pnap_4650 transposase IS3/IS911 family protein.
  
 0.788
AEB86176.1
PFAM: Transposase IS3/IS911family; KEGG: pna:Pnap_4650 transposase IS3/IS911 family protein.
  
 0.788
AEB86291.1
PFAM: Transposase IS3/IS911family; KEGG: pna:Pnap_4650 transposase IS3/IS911 family protein.
  
 0.788
AEB84790.1
PFAM: Transposase IS3/IS911family; KEGG: ctt:CtCNB1_1899 transposase IS3/IS911.
 
  
 0.778
AEB86136.1
PFAM: Transposase IS3/IS911family; KEGG: ctt:CtCNB1_1899 transposase IS3/IS911.
 
  
 0.778
AEB82840.1
TIGRFAM: Phage head-tail joining protein; KEGG: aav:Aave_1622 phage head-tail adaptor, putative.
       0.648
AEB82843.1
TIGRFAM: Bacteriophage HK022, Gp6; KEGG: bcm:Bcenmc03_1290 phage protein DNA packaging protein.
       0.427
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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