Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AEB82865.1PFAM: Transport-associated; KEGG: ajs:Ajs_0416 transport-associated. (221 aa)    
Predicted Functional Partners:
AEB82864.1
PFAM: Sugar isomerase (SIS); KEGG: dia:Dtpsy_0407 phosphoheptose isomerase.
  
    0.882
AEB83399.1
PFAM: Protein of unknown function DUF1328; KEGG: dia:Dtpsy_2834 hypothetical protein.
  
  
 0.749
AEB83398.1
PFAM: Protein of unknown function DUF883, ElaB; KEGG: dia:Dtpsy_2835 hypothetical protein.
  
  
 0.704
AEB82863.1
UPF0102 protein yraN; TIGRFAM: Uncharacterised protein family UPF0102; HAMAP: Uncharacterised protein family UPF0102; KEGG: dia:Dtpsy_0406 hypothetical protein; PFAM: Uncharacterised protein family UPF0102; Belongs to the UPF0102 family.
       0.673
AEB84582.1
KEGG: aav:Aave_2203 succinate dehydrogenase subunit D; TIGRFAM: Succinate dehydrogenase, hydrophobic membrane anchor; PFAM: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit.
  
     0.649
bamD
Outer membrane assembly lipoprotein YfiO; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
   
 0.579
AEB83275.1
PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: dia:Dtpsy_0755 glutathione S-transferase domain protein.
 
  
 0.561
ftsQ
Polypeptide-transport-associated domain protein FtsQ-type; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly.
 
     0.536
AEB86111.1
NlpBDapX family lipoprotein; PFAM: Lipoprotein, NlpB; KEGG: ajs:Ajs_1009 NlpB/DapX family lipoprotein.
  
  
 0.516
AEB84583.1
KEGG: dia:Dtpsy_2283 succinate dehydrogenase, cytochrome b556 subunit; TIGRFAM: Succinate dehydrogenase, cytochrome b556 subunit; PFAM: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit.
  
     0.513
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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