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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB82867.1KEGG: ajs:Ajs_0418 twitching motility protein; TIGRFAM: Pilus retraction protein PilT; PFAM: Type II secretion system protein E. (378 aa)    
Predicted Functional Partners:
AEB83212.1
TIGRFAM: Type IV pilus assembly protein PilM; KEGG: ajs:Ajs_0730 type IV pilus assembly protein PilM.
 
  
 0.817
AEB83286.1
PFAM: Type II secretion system F domain; KEGG: ajs:Ajs_0804 type II secretion system protein.
 
   
 0.801
AEB82868.1
Putative transcriptional regulator, Crp/Fnr family; KEGG: dia:Dtpsy_0411 cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain.
  
  
 0.799
AEB83285.1
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.799
AEB83030.1
PFAM: Type II secretion system F domain; KEGG: eba:ebA1619 general secretion pathway protein F.
 
   
 0.789
AEB83160.1
KEGG: dia:Dtpsy_0642 general secretion pathway protein F; TIGRFAM: General secretion pathway protein F; PFAM: Type II secretion system F domain.
 
   
 0.768
AEB83216.1
TIGRFAM: Type IV pilus secretin PilQ; PFAM: Type II/III secretion system; NolW-like; Secretin/TonB, short N-terminal; KEGG: dia:Dtpsy_0703 type IV pilus secretin PilQ; SMART: Secretin/TonB, short N-terminal.
  
   
 0.719
AEB82869.1
KEGG: aav:Aave_0637 twitching motility protein; TIGRFAM: Pilus retraction protein PilT; PFAM: Type II secretion system protein E.
 
  
0.716
AEB83214.1
KEGG: ajs:Ajs_0732 pilus assembly protein, PilO.
 
  
 0.686
AEB83213.1
PFAM: Fimbrial assembly; KEGG: ajs:Ajs_0731 fimbrial assembly family protein.
  
  
 0.643
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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