STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB82896.1KEGG: cph:Cpha266_1840 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR2; SMART: Tetratricopeptide repeat. (734 aa)    
Predicted Functional Partners:
AEB83359.1
PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR-4; KEGG: ajs:Ajs_0898 TPR repeat-containing protein.
  
 
 0.598
AEB83253.1
KEGG: ajs:Ajs_0769 putative transmembrane protein.
  
 
 0.572
AEB84310.1
TniQ family protein; KEGG: bxe:Bxe_C1175 transposition protein TniQ; manually curated; PFAM: TniQ.
   
 
 0.556
AEB86525.1
Glycosyl transferase family 2; KEGG: psa:PST_1402 hypothetical protein; manually curated; PFAM: Glycosyl transferase, family 2; Capsule polysaccharide biosynthesis.
 
  
 0.527
AEB82895.1
Fumarylacetoacetate (FAA) hydrolase; PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: ajs:Ajs_0449 fumarylacetoacetate (FAA) hydrolase.
  
    0.489
AEB83653.1
Procollagen-proline dioxygenase; PFAM: Oxoglutarate/iron-dependent oxygenase; KEGG: ajs:Ajs_3293 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit.
 
     0.481
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
    0.476
AEB83043.1
Teichoic-acid-transporting ATPase; PFAM: ABC transporter-like; KEGG: vei:Veis_0673 ABC transporter related; SMART: ATPase, AAA+ type, core.
 
   
 0.469
AEB84209.1
KEGG: xfa:XF2733 hypothetical protein.
   
 
 0.462
AEB83105.1
KEGG: rfr:Rfer_0658 polysaccharide export protein; TIGRFAM: PEP-CTERM, putative polysaccharide export protein; PFAM: Polysaccharide export protein; Soluble ligand binding domain.
     
 0.449
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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