STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB82900.1KEGG: vei:Veis_1581 formyl-CoA transferase; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family. (410 aa)    
Predicted Functional Partners:
AEB82901.1
KEGG: cti:RALTA_B1741 hypothetical protein.
    
 0.813
AEB82903.1
PFAM: MaoC-like dehydratase; KEGG: cti:RALTA_B1743 hypothetical protein.
    
 0.813
AEB82902.1
Butyryl-CoA dehydrogenase; KEGG: cti:RALTA_B1742 putative acyl CoA dehydrogenase oxidoreductase protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain.
  
 
  0.802
AEB82904.1
MmgE/PrpD family protein; PFAM: MmgE/PrpD; KEGG: vei:Veis_1585 MmgE/PrpD family protein.
  
    0.795
AEB82899.1
KEGG: vei:Veis_1580 citryl-CoA lyase; PFAM: Aldehyde-lyase domain; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.774
AEB82898.1
KEGG: vei:Veis_1579 hypothetical protein.
  
    0.623
AEB82905.1
KEGG: xau:Xaut_1974 citryl-CoA lyase; PFAM: Aldehyde-lyase domain; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.554
AEB82906.1
Transcriptional regulator, IclR family; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; KEGG: rcu:RCOM_0002820 Transcriptional regulator kdgR, putative.
       0.504
AEB82897.1
Trimethylamine-N-oxide reductase (cytochrome c); PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding domain; Molybdopterin oxidoreductase, Fe4S4 domain; KEGG: ajs:Ajs_0451 molybdopterin oxidoreductase; SMART: Molybdopterin oxidoreductase, Fe4S4 domain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  
 0.432
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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