Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB82941.1KEGG: aav:Aave_4263 flavin reductase domain-containing protein; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding. (212 aa)    
Predicted Functional Partners:
AEB82942.1
KEGG: aav:Aave_4262 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal.
 
    0.808
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
  
  
 0.684
AEB82939.1
PFAM: Endoribonuclease L-PSP; KEGG: aav:Aave_4266 endoribonuclease L-PSP.
 
  
 0.611
AEB82938.1
PFAM: Amidohydrolase 2; KEGG: aav:Aave_4267 amidohydrolase 2.
 
     0.542
AEB82937.1
KEGG: aav:Aave_4268 5-carboxymethyl-2-hydroxymuconate delta-isomerase; PFAM: Fumarylacetoacetase, C-terminal-like.
  
  
 0.516
AEB82936.1
TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; KEGG: aav:Aave_4269 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; PFAM: Fumarylacetoacetase, C-terminal-like.
  
  
 0.515
AEB82935.1
TIGRFAM: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; KEGG: dia:Dtpsy_0475 2-dehydro-3-deoxyglucarate aldolase; PFAM: Aldehyde-lyase domain; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.511
AEB82940.1
KEGG: aav:Aave_4265 hypothetical protein.
       0.491
AEB83161.1
Luciferase family oxidoreductase, group 1; KEGG: ajs:Ajs_0664 luciferase family protein; TIGRFAM: Luciferase family oxidoreductase, group 1; PFAM: Luciferase-like, subgroup.
  
  
 0.420
AEB85830.1
Ferredoxin--NAD(+) reductase; KEGG: dia:Dtpsy_2414 CDP-6-deoxy-delta-3,4-glucoseen reductase; PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase, FAD-binding domain; Ferredoxin.
  
  
 0.417
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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