close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB82978.1KEGG: dia:Dtpsy_0515 hypothetical protein. (64 aa)    
Predicted Functional Partners:
AEB82977.1
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rme:Rmet_4030 hypothetical protein.
       0.773
ruvB
Holliday junction ATP-dependent DNA helicase ruvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
  
    0.772
AEB82976.1
PFAM: Protein of unknown function DUF185; KEGG: dia:Dtpsy_0510 protein of unknown function DUF185.
       0.765
AEB83238.1
KEGG: dia:Dtpsy_0721 sulfate transporter/antisigma-factor antagonist STAS.
  
     0.758
AEB87006.1
PFAM: Barstar (barnase inhibitor); KEGG: dia:Dtpsy_3467 barstar (barnase inhibitor).
  
     0.737
AEB86734.1
Protein of unknown function DUF132; KEGG: dia:Dtpsy_0340 hypothetical protein; TIGRFAM: Protein of unknown function DUF132; SMART: Nucleotide binding protein, PINc.
  
     0.732
AEB86010.1
KEGG: dia:Dtpsy_2705 hypothetical protein.
  
     0.726
AEB83828.1
Protein of unknown function DUF540; PFAM: Uncharacterised protein family CysZ; KEGG: dia:Dtpsy_1107 putative transmembrane protein.
  
     0.724
AEB82893.1
PFAM: Protein of unknown function DUF3567; KEGG: ajs:Ajs_0446 hypothetical protein.
  
     0.722
AEB84037.1
PFAM: HemX; KEGG: ajs:Ajs_2892 protein of unknown function DUF513, HemX.
 
  
 0.722
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.