Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB83000.1KEGG: dia:Dtpsy_0533 PGAP1 family protein. (300 aa)    
Predicted Functional Partners:
AEB82998.1
KEGG: ajs:Ajs_0515 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like.
 
   
 0.780
AEB86845.1
Sporulation domain-containing protein; PFAM: Sporulation-related domain; KEGG: dia:Dtpsy_3342 sporulation domain protein.
  
     0.743
AEB84523.1
KEGG: ajs:Ajs_2549 hypothetical protein.
  
     0.581
AEB86934.1
PFAM: Porin, Gram-negative type; KEGG: vei:Veis_0301 porin.
  
    0.569
AEB82909.1
PFAM: aminopeptidase; KEGG: dia:Dtpsy_0447 putative zinc protease protein.
 
     0.563
AEB82868.1
Putative transcriptional regulator, Crp/Fnr family; KEGG: dia:Dtpsy_0411 cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain.
  
  
 0.552
AEB82999.1
KEGG: ajs:Ajs_0516 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase.
     
 0.546
AEB86873.1
PFAM: Protein of unknown function DUF1631; KEGG: dia:Dtpsy_3353 hypothetical protein.
  
     0.522
AEB84487.1
Hydroxybutyrate-dimer hydrolase; KEGG: dia:Dtpsy_2060 putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane; PFAM: D-(-)-3-hydroxybutyrate oligomer hydrolase, putative.
  
     0.489
AEB86614.1
KEGG: dia:Dtpsy_3161 hypothetical protein.
  
     0.478
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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