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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB83029.1PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; KEGG: vei:Veis_0688 general secretory pathway protein E. (567 aa)    
Predicted Functional Partners:
AEB83030.1
PFAM: Type II secretion system F domain; KEGG: eba:ebA1619 general secretion pathway protein F.
 
 
 0.983
AEB83160.1
KEGG: dia:Dtpsy_0642 general secretion pathway protein F; TIGRFAM: General secretion pathway protein F; PFAM: Type II secretion system F domain.
 
 
 0.937
AEB83286.1
PFAM: Type II secretion system F domain; KEGG: ajs:Ajs_0804 type II secretion system protein.
 
 
 0.928
AEB86065.1
KEGG: dia:Dtpsy_2747 type II secretion system protein E; PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; SMART: ATPase, AAA+ type, core.
  
  
 
0.915
AEB83031.1
KEGG: aav:Aave_4158 general secretion pathway protein G; TIGRFAM: General secretion pathway protein G; Prepilin-type cleavage/methylation, N-terminal; PFAM: Type II secretion system protein G; Prepilin-type cleavage/methylation, N-terminal.
 
 
 0.913
AEB83163.1
General secretory pathway protein E; TIGRFAM: Type II secretion system GspE; PFAM: Type II secretion system protein E; KEGG: dia:Dtpsy_0645 general secretory pathway protein E; SMART: ATPase, AAA+ type, core.
  
  
 
0.908
AEB83285.1
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.884
AEB83033.1
KEGG: aav:Aave_4156 general secretion pathway protein I.
  
 
 0.817
AEB83167.1
PFAM: General secretion pathway L; KEGG: ajs:Ajs_0670 general secretion pathway L.
  
 
 0.814
AEB83026.1
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
   
   0.808
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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