STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB83121.1PFAM: Polysaccharide deacetylase; KEGG: neu:NE0847 hypothetical protein. (320 aa)    
Predicted Functional Partners:
AEB83120.1
Wzy family polymerase, exosortase system type 1 associated; TIGRFAM: Conserved hypothetical protein CHP03097, O-antigen ligase-related; KEGG: hse:Hsero_2764 O-antigen polymerase.
 
   
 0.949
AEB83115.1
Sugar transferase, PEP-CTERM/EpsH1 system associated; KEGG: rfr:Rfer_0668 glycosyl transferase, group 1; TIGRFAM: Sugar transferase, PEP-CTERM, Stp2; PFAM: Glycosyl transferase, group 1.
 
  
 0.904
AEB83113.1
Exosortase 1; KEGG: rfr:Rfer_0666 hypothetical protein; TIGRFAM: Exosortase 1; Exosortase, EpsH; Methanolan biosynthesis EpsI; PFAM: Exosortase EpsH-related.
 
     0.903
AEB83108.1
TIGRFAM: Conserved hypothetical protein CHP03016, PEP-CTERM; KEGG: rfr:Rfer_0661 hypothetical protein.
 
     0.894
AEB83112.1
Sugar transferase, PEP-CTERM/EpsH1 system associated; KEGG: dar:Daro_2405 glycosyl transferase, group 1; TIGRFAM: Sugar transferase, PEP-CTERM, Stp1; PFAM: Glycosyl transferase, group 1.
 
  
 0.887
AEB83111.1
KEGG: rfr:Rfer_0665 hypothetical protein; manually curated; TIGRFAM: PEP-CTERM system-associated, FemAB-related.
 
   
 0.881
AEB83106.1
Manually curated; TIGRFAM: PEP-CTERM locus polysaccharide chain length determinant; KEGG: rfr:Rfer_0659 lipopolysaccharide biosynthesis; PFAM: Lipopolysaccharide biosynthesis.
 
   
 0.875
AEB83110.1
KEGG: app:CAP2UW1_1417 polysaccharide deactylase family protein, PEP-Cterm locus subfamily; TIGRFAM: PEP-CTERM locus, polysaccharide deactylase; PFAM: Polysaccharide deacetylase.
 
   
 0.848
AEB83122.1
PFAM: Polysaccharide deacetylase; KEGG: tgr:Tgr7_2375 polysaccharide deacetylase.
 
    
0.845
AEB83105.1
KEGG: rfr:Rfer_0658 polysaccharide export protein; TIGRFAM: PEP-CTERM, putative polysaccharide export protein; PFAM: Polysaccharide export protein; Soluble ligand binding domain.
 
   
 0.831
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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