STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB83136.1TIGRFAM: Signal transduction histidine kinase, PEP-CTERM system, putative; PFAM: ATPase-like, ATP-binding domain; GAF; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: rfr:Rfer_0703 periplasmic sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain. (693 aa)    
Predicted Functional Partners:
AEB83137.1
Two component, sigma54 specific, transcriptional regulator, Fis family; TIGRFAM: Signal transduction response regulator, PEP-CTERM system, putative; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; KEGG: rfr:Rfer_0704 two component, sigma54 specific, fis family transcriptional regulator; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core.
 
 
 
 0.944
AEB83138.1
KEGG: rfr:Rfer_0705 tetratricopeptide TPR_2; TIGRFAM: PEP-CTERM system TPR-repeat lipoprotein, putative; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-4; Tetratricopeptide TPR-1.
 
   
 0.936
AEB83135.1
TIGRFAM: Pyridoxal-dependent decarboxylase, exosortase system type 1 associated; KEGG: rfr:Rfer_0700 Orn/DAP/Arg decarboxylase 2; PFAM: Orn/DAP/Arg decarboxylase 2, C-terminal; Orn/DAP/Arg decarboxylase 2, N-terminal.
 
   
 0.935
AEB83134.1
TIGRFAM: Acyl-CoA ligase (AMP-forming), exosortase system type 1 associated; KEGG: app:CAP2UW1_1626 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated; PFAM: AMP-dependent synthetase/ligase.
 
   
 0.927
AEB83133.1
KEGG: rfr:Rfer_0698 hypothetical protein.
 
 
 0.916
AEB83132.1
TIGRFAM: Hydrolase, ortholog 2, exosortase system type 1 associated; KEGG: app:CAP2UW1_4344 hydrolase, exosortase system type 1 associated.
 
 
 
 0.903
AEB83139.1
PFAM: Peptidase S1/S6, chymotrypsin/Hap; KEGG: rfr:Rfer_0710 peptidase S1 and S6, chymotrypsin/Hap.
 
  
 0.898
AEB83131.1
Hydrolase, exosortase system type 1 associated; KEGG: rfr:Rfer_0694 esterase/lipase/thioesterase family protein; TIGRFAM: Hydrolase, ortholog 1, exosortase system type 1 associated; PFAM: Alpha/beta hydrolase fold-1.
 
   
 0.893
AEB83105.1
KEGG: rfr:Rfer_0658 polysaccharide export protein; TIGRFAM: PEP-CTERM, putative polysaccharide export protein; PFAM: Polysaccharide export protein; Soluble ligand binding domain.
 
   
 0.798
AEB83106.1
Manually curated; TIGRFAM: PEP-CTERM locus polysaccharide chain length determinant; KEGG: rfr:Rfer_0659 lipopolysaccharide biosynthesis; PFAM: Lipopolysaccharide biosynthesis.
 
   
 0.798
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.