Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB83144.1KEGG: ctt:CtCNB1_3962 hypothetical protein. (425 aa)    
Predicted Functional Partners:
AEB83143.1
KEGG: dac:Daci_4992 hypothetical protein.
 
     0.800
AEB82549.1
PFAM: Cupin 2, conserved barrel; KEGG: aav:Aave_0177 cupin 2 domain-containing protein.
  
   
 0.694
AEB83142.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_4993 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.628
rlpA
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
  
 
 0.554
cpoB
Tol-pal system protein YbgF; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
  
  
 0.513
AEB85972.1
KEGG: gpb:HDN1F_26000 hypothetical protein.
 
  
 0.511
AEB85971.1
PFAM: Protein of unknown function DUF2149; KEGG: dia:Dtpsy_2683 hypothetical protein.
  
     0.510
AEB85858.1
Manually curated; KEGG: pol:Bpro_4383 putative porin precursor transmembrane protein.
 
 
 
 0.493
AEB86592.1
Porin; KEGG: vap:Vapar_4252 porin.
 
 
 
 0.479
AEB86487.1
PFAM: Uncharacterised protein family AroM; KEGG: axy:AXYL_04087 AroM family protein.
  
     0.478
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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