Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEB83166.1PFAM: General secretion pathway M protein; KEGG: ajs:Ajs_0669 hypothetical protein. (169 aa)    
Predicted Functional Partners:
AEB83167.1
PFAM: General secretion pathway L; KEGG: ajs:Ajs_0670 general secretion pathway L.
  
 
 0.931
AEB83037.1
PFAM: General secretion pathway protein M; KEGG: vei:Veis_0680 general secretion pathway protein M.
     
  0.900
AEB83164.1
KEGG: dia:Dtpsy_0646 general secretion pathway protein D; TIGRFAM: Type II secretion system GspD; PFAM: Type II/III secretion system; NolW-like.
  
  
 0.837
AEB83165.1
KEGG: ajs:Ajs_0668 putative general secretory pathway N transmembrane protein.
     
 0.773
AEB83169.1
KEGG: ajs:Ajs_0672 hypothetical protein.
  
  
 0.728
AEB83168.1
KEGG: ajs:Ajs_0671 general secretion pathway protein K.
  
  
 0.727
AEB83170.1
KEGG: dia:Dtpsy_0652 general secretion pathway protein I; TIGRFAM: General secretion pathway protein I; Prepilin-type cleavage/methylation, N-terminal; PFAM: Type II secretion system protein I/J; Prepilin-type cleavage/methylation, N-terminal.
  
  
 0.727
AEB83163.1
General secretory pathway protein E; TIGRFAM: Type II secretion system GspE; PFAM: Type II secretion system protein E; KEGG: dia:Dtpsy_0645 general secretory pathway protein E; SMART: ATPase, AAA+ type, core.
  
  
 0.722
AEB83171.1
KEGG: dia:Dtpsy_0653 general secretion pathway protein H; manually curated; TIGRFAM: Bacterial general secretion pathway protein H; Prepilin-type cleavage/methylation, N-terminal.
  
  
 0.546
AEB83173.1
KEGG: dia:Dtpsy_0655 hypothetical protein.
     
 0.528
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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