STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB83251.1KEGG: ajs:Ajs_0767 putative transmembrane protein. (457 aa)    
Predicted Functional Partners:
AEB83254.1
KEGG: ajs:Ajs_0770 putative transmembrane protein.
 
   
 0.967
AEB83255.1
KEGG: ajs:Ajs_0771 putative lipoprotein.
 
   
 0.966
AEB83253.1
KEGG: ajs:Ajs_0769 putative transmembrane protein.
 
  
 0.964
AEB83252.1
PFAM: Glycosyl transferase, group 1; KEGG: ajs:Ajs_0768 glycosyl transferase, group 1.
 
   
 0.963
AEB83256.1
PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-4; KEGG: ajs:Ajs_0772 TPR repeat-containing protein.
 
   
 0.951
AEB83257.1
PFAM: TM1410 hypothetical-related protein; KEGG: ajs:Ajs_0773 polysaccharide deacetylase.
 
   
 0.931
AEB83250.1
PFAM: Spherulation-specific family 4; KEGG: ajs:Ajs_0766 hypothetical protein.
 
     0.709
AEB83258.1
TIGRFAM: UDP-glucose 4-epimerase; KEGG: ajs:Ajs_0774 UDP-galactose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
     0.555
AEB86678.1
PFAM: Spore coat protein CotH; KEGG: glo:Glov_2109 spore coat protein CotH.
     0.512
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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