Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
AEB83269.1NGG1p interacting factor 3 protein, NIF3; KEGG: dia:Dtpsy_0749 protein of unknown function DUF34; TIGRFAM: NGG1p interacting factor 3, NIF3; PFAM: NGG1p interacting factor 3, NIF3. (250 aa)    
Predicted Functional Partners:
AEB83270.1
4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; KEGG: ajs:Ajs_0787 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; Belongs to the PdxA family.
       0.712
AEB85526.1
Urea amidolyase related protein; SMART: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; TIGRFAM: Allophanate hydrolase subunit 2; Conserved hypothetical protein CHP00370; KEGG: reu:Reut_A2450 allophanate hydrolase subunit 2; PFAM: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1.
  
  
 0.684
AEB83023.1
TIGRFAM: dTDP-glucose 4,6-dehydratase; KEGG: ajs:Ajs_0537 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
    0.606
AEB83268.1
PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; KEGG: ajs:Ajs_0784 peptidase S1 and S6, chymotrypsin/Hap; SMART: PDZ/DHR/GLGF; Belongs to the peptidase S1C family.
  
    0.603
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
  
 0.538
AEB86611.1
PFAM: Monooxygenase, FAD-binding; KEGG: ajs:Ajs_3884 FAD dependent oxidoreductase.
    
   0.502
cmk
Cytidylate kinase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate; Belongs to the cytidylate kinase family. Type 1 subfamily.
 
     0.452
AEB85531.1
KEGG: app:CAP2UW1_0424 hypothetical protein.
  
  
 0.451
AEB83435.1
KEGG: tmz:Tmz1t_0986 transcriptional regulator, GntR family with aminotransferase domain; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; SMART: HTH transcriptional regulator, GntR.
  
    0.402
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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