Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB83287.1TIGRFAM: ATPase, type IV, pilus assembly, PilB; PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; KEGG: ajs:Ajs_0805 type IV-A pilus assembly ATPase PilB; SMART: ATPase, AAA+ type, core. (579 aa)    
Predicted Functional Partners:
AEB83286.1
PFAM: Type II secretion system F domain; KEGG: ajs:Ajs_0804 type II secretion system protein.
 
 
 0.984
AEB83285.1
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.969
AEB83030.1
PFAM: Type II secretion system F domain; KEGG: eba:ebA1619 general secretion pathway protein F.
 
 
 0.935
AEB83160.1
KEGG: dia:Dtpsy_0642 general secretion pathway protein F; TIGRFAM: General secretion pathway protein F; PFAM: Type II secretion system F domain.
 
 
 0.935
AEB83167.1
PFAM: General secretion pathway L; KEGG: ajs:Ajs_0670 general secretion pathway L.
  
 
 0.797
AEB83212.1
TIGRFAM: Type IV pilus assembly protein PilM; KEGG: ajs:Ajs_0730 type IV pilus assembly protein PilM.
 
 
 
 0.767
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
     
 0.729
AEB83172.1
KEGG: aav:Aave_0925 general secretion pathway protein G; TIGRFAM: General secretion pathway protein G; Prepilin-type cleavage/methylation, N-terminal; PFAM: Type II secretion system protein G; Prepilin-type cleavage/methylation, N-terminal.
 
 
 0.722
AEB83216.1
TIGRFAM: Type IV pilus secretin PilQ; PFAM: Type II/III secretion system; NolW-like; Secretin/TonB, short N-terminal; KEGG: dia:Dtpsy_0703 type IV pilus secretin PilQ; SMART: Secretin/TonB, short N-terminal.
 
 
 
 0.709
AEB83031.1
KEGG: aav:Aave_4158 general secretion pathway protein G; TIGRFAM: General secretion pathway protein G; Prepilin-type cleavage/methylation, N-terminal; PFAM: Type II secretion system protein G; Prepilin-type cleavage/methylation, N-terminal.
 
 
 0.701
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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