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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB83290.1PFAM: Protein of unknown function DUF1814; KEGG: vap:Vapar_5847 hypothetical protein. (218 aa)    
Predicted Functional Partners:
AEB83289.1
Helix-turn-helix domain protein; KEGG: vap:Vapar_5848 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3.
       0.773
AEB83291.1
Helix-turn-helix domain protein; KEGG: tbd:Tbd_1344 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3.
       0.480
AEB83292.1
KEGG: pol:Bpro_0676 hypothetical protein.
       0.480
AEB83948.1
Hypothetical protein; Manually curated; KEGG: bxe:Bxe_A1801 hypothetical protein.
  
     0.472
AEB85147.1
PFAM: Lytic transglycosylase-like, catalytic; KEGG: ajs:Ajs_1544 lytic transglycosylase, catalytic.
  
     0.431
AEB83288.1
KEGG: ajs:Ajs_0807 phage integrase family protein; manually curated; PFAM: Integrase, catalytic core, phage; Belongs to the 'phage' integrase family.
       0.400
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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