STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEB83316.1PFAM: N-formylglutamate amidohydrolase; KEGG: ajs:Ajs_0856 N-formylglutamate amidohydrolase. (300 aa)    
Predicted Functional Partners:
hutI
TIGRFAM: Imidazolonepropionase; KEGG: pol:Bpro_1035 imidazolonepropionase; PFAM: Amidohydrolase 1.
  
  
 0.808
AEB83315.1
KEGG: ajs:Ajs_0855 hypothetical protein.
       0.773
AEB84090.1
KEGG: dac:Daci_0155 N-formimino-L-glutamate deiminase; TIGRFAM: Formiminoglutamate deiminase; PFAM: Amidohydrolase 1.
 
 
 0.704
AEB83314.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_0783 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.626
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
  
 0.544
hutH
PFAM: Phenylalanine/histidine ammonia-lyase; TIGRFAM: Histidine ammonia-lyase; HAMAP: Histidine ammonia-lyase; KEGG: aav:Aave_2965 histidine ammonia-lyase.
  
  
 0.517
AEB85986.1
PFAM: YCII-related; KEGG: cti:RALTA_B1424 YciI-like protein.
  
     0.500
AEB86924.1
PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: dia:Dtpsy_3406 hypothetical protein.
 
     0.499
AEB83317.1
PFAM: Mechanosensitive ion channel MscS; Protein of unknown function DUF3772; KEGG: ajs:Ajs_0857 MscS mechanosensitive ion channel.
 
     0.489
AEB84088.1
PFAM: Uncharacterised protein family HutD; KEGG: aav:Aave_2962 hypothetical protein.
 
    0.489
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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