Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB83328.1KEGG: dia:Dtpsy_0797 import inner membrane translocase subunit Tim44; PFAM: Membrane transporter, Tim44-related/Ribosomal protein L45; SMART: Membrane transporter, Tim44-related/Ribosomal protein L45. (332 aa)    
Predicted Functional Partners:
AEB83329.1
KEGG: dia:Dtpsy_0798 hypothetical protein.
 
     0.782
ubiE
Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).
       0.683
ubiB
2-polyprenylphenol 6-hydroxylase; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis.
       0.620
AEB86085.1
Uncharacterized protein family UPF0307; PFAM: Ribosome-associated, YjgA; KEGG: dia:Dtpsy_0970 protein of unknown function DUF615; Belongs to the UPF0307 family.
  
     0.610
AEB83331.1
PFAM: Sodium/solute symporter; KEGG: dia:Dtpsy_0800 Na+/solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.601
AEB85966.1
KEGG: ajs:Ajs_3321 hypothetical protein.
  
     0.600
AEB85617.1
KEGG: dia:Dtpsy_1366 phasin family protein; TIGRFAM: Phasin, subfamily 1; PFAM: Phasin.
  
     0.579
AEB83326.1
Protein of unknown function DUF971; PFAM: Gamma-butyrobetaine dioxygenase/Trimethyllysine dioxygenase, N-terminal; KEGG: dia:Dtpsy_0795 protein of unknown function DUF971.
       0.578
AEB85189.1
Protein of unknown function UPF0005; PFAM: Inhibitor of apoptosis-promoting Bax1-related; KEGG: dia:Dtpsy_1437 protein of unknown function UPF0005; Belongs to the BI1 family.
 
  
 0.559
lptA
Lipopolysaccharide transport periplasmic protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane.
  
     0.521
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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