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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB83370.1KEGG: dac:Daci_2707 outer membrane efflux protein. (420 aa)    
Predicted Functional Partners:
AEB83371.1
PFAM: Protein of unknown function DUF3240; KEGG: dac:Daci_2708 hypothetical protein.
 
     0.921
AEB85092.1
TIGRFAM: Secretion protein HlyD; KEGG: ajs:Ajs_1482 RND family efflux transporter MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.624
AEB82767.1
PFAM: Secretion protein HlyD; KEGG: ajs:Ajs_0262 secretion protein HlyD family protein.
  
 
 0.600
AEB84573.1
Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; KEGG: axy:AXYL_01138 RND family efflux transporter MFP subunit 3; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.582
AEB83373.1
KEGG: dac:Daci_2710 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.571
AEB83974.1
PFAM: Secretion protein HlyD; KEGG: bbr:BB2383 HlyD family secretion protein.
  
 
 0.521
AEB84113.1
PFAM: Secretion protein HlyD; KEGG: tmz:Tmz1t_1020 hypothetical protein.
  
 
 0.521
AEB86722.1
PFAM: Secretion protein HlyD; KEGG: axy:AXYL_05661 HlyD family secretion family protein 5.
  
 
 0.521
AEB85731.1
KEGG: dia:Dtpsy_2210 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.439
AEB83368.1
PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region.
       0.423
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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