Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AEB83381.1ABC-type transporter, periplasmic subunit family 3; KEGG: dac:Daci_4553 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3. (245 aa)    
Predicted Functional Partners:
AEB83382.1
KEGG: dac:Daci_4554 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal.
   
 0.921
AEB83383.1
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
 
  
 0.851
AEB83380.1
PFAM: Lactonase, 7-bladed beta propeller; KEGG: dac:Daci_4552 putative hemagglutinin-related protein.
 
     0.833
AEB83384.1
KEGG: vap:Vapar_6186 hypothetical protein.
       0.539
argG
PFAM: Argininosuccinate synthase; TIGRFAM: Argininosuccinate synthase; HAMAP: Argininosuccinate synthase; KEGG: dia:Dtpsy_2233 argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 2 subfamily.
 
  
 0.469
AEB86924.1
PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: dia:Dtpsy_3406 hypothetical protein.
 
   
 0.456
AEB83385.1
KEGG: dac:Daci_4557 hypothetical protein.
       0.431
AEB83144.1
KEGG: ctt:CtCNB1_3962 hypothetical protein.
 
   
 0.428
AEB85508.1
Hypothetical protein; KEGG: aav:Aave_2648 putative signal peptide protein.
 
   
 0.417
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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