Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB83382.1KEGG: dac:Daci_4554 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal. (313 aa)    
Predicted Functional Partners:
AEB83381.1
ABC-type transporter, periplasmic subunit family 3; KEGG: dac:Daci_4553 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3.
   
 0.921
AEB83380.1
PFAM: Lactonase, 7-bladed beta propeller; KEGG: dac:Daci_4552 putative hemagglutinin-related protein.
 
   
 0.849
AEB83383.1
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
  
  
 0.807
AEB83384.1
KEGG: vap:Vapar_6186 hypothetical protein.
 
     0.664
AEB84480.1
KEGG: hse:Hsero_2301 hypothetical protein.
 
   
 0.626
AEB82743.1
TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; KEGG: dia:Dtpsy_0227 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase.
  
  
 0.603
AEB83834.1
TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; KEGG: dia:Dtpsy_1114 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase.
  
  
 0.603
AEB85882.1
Palmitoyl-CoA hydrolase; KEGG: axy:AXYL_03759 BAAT/acyl-CoA thioester hydrolase family protein 1; PFAM: BAAT/Acyl-CoA thioester hydrolase C-terminal; Acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase.
  
     0.591
AEB86791.1
Universal protein YeaZ; KEGG: ajs:Ajs_3940 peptidase M22, glycoprotease; TIGRFAM: Conserved hypothetical protein CHP03725, YeaZ; PFAM: Peptidase M22, glycoprotease.
  
    0.591
tadA
CMP/dCMP deaminase zinc-binding protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
  
  
 0.581
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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