Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
AEB83421.1PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: dia:Dtpsy_2818 5-carboxymethyl-2-hydroxymuconate isomerase. (120 aa)    
Predicted Functional Partners:
AEB83422.1
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
       0.684
AEB83495.1
KEGG: rfr:Rfer_0701 hypothetical protein.
  
     0.590
AEB84562.1
KEGG: dia:Dtpsy_2195 hypothetical protein.
  
     0.576
AEB83423.1
KEGG: reh:H16_A1911 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain.
 
   
 0.551
AEB82486.1
PFAM: Outer membrane efflux protein; KEGG: xtr:100485479 hypothetical protein LOC100485479.
  
     0.530
AEB82935.1
TIGRFAM: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; KEGG: dia:Dtpsy_0475 2-dehydro-3-deoxyglucarate aldolase; PFAM: Aldehyde-lyase domain; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.477
AEB84094.1
4-hydroxy-2-oxovalerate aldolase; KEGG: aav:Aave_2080 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PFAM: Aldehyde-lyase domain; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.477
AEB84657.1
PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: ajs:Ajs_1613 extradiol ring-cleavage dioxygenase III subunit B.
  
  
 0.477
AEB85489.1
KEGG: dia:Dtpsy_1968 hypothetical protein.
  
     0.477
AEB84810.1
Fumarylacetoacetate (FAA) hydrolase; PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: dia:Dtpsy_1677 fumarylacetoacetate (FAA) hydrolase.
  
  
 0.470
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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