STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB83431.1KEGG: ajs:Ajs_3485 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; Helix-turn-helix, Fis-type; SMART: Helix-turn-helix, AraC type, DNA binding domain. (335 aa)    
Predicted Functional Partners:
AEB83430.1
PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: dia:Dtpsy_2809 fumarate reductase/succinate dehydrogenase flavoprotein domain protein.
 
     0.650
AEB83429.1
L-lactate dehydrogenase (cytochrome); KEGG: ajs:Ajs_3487 FMN-dependent alpha-hydroxy acid dehydrogenase; PFAM: FMN-dependent dehydrogenase.
     
 0.567
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.514
AEB83428.1
Acetolactate synthase; KEGG: ajs:Ajs_3488 hypothetical protein; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain.
 
   
 0.506
AEB82502.1
AraC protein arabinose-binding/dimerization; KEGG: dia:Dtpsy_0054 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC type, DNA binding domain.
 
 
 0.503
AEB86561.1
KEGG: dia:Dtpsy_3124 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1.
 
   
 0.409
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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