Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AEB83469.1PFAM: Globin, truncated bacterial-like; KEGG: ajs:Ajs_3454 globin. (145 aa)    
Predicted Functional Partners:
AEB83468.1
KEGG: dia:Dtpsy_2782 transcriptional regulator, TraR/DksA family.
       0.790
AEB83465.1
PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: dia:Dtpsy_2785 protein of unknown function DUF214.
 
     0.670
AEB83467.1
KEGG: ajs:Ajs_3456 hypothetical protein.
       0.642
fdhD
Formate dehydrogenase subunit FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
       0.521
AEB83466.1
KEGG: dia:Dtpsy_2784 hypothetical protein.
       0.516
AEB86066.1
KEGG: dia:Dtpsy_2748 hypothetical protein.
 
     0.471
AEB83151.1
PFAM: DSBA-like thioredoxin domain; KEGG: ajs:Ajs_0654 DsbA oxidoreductase.
  
  
 0.451
AEB86183.1
PFAM: DSBA-like thioredoxin domain; KEGG: bpl:BURPS1106A_A3104 thioredoxin domain-containing protein.
  
  
 0.451
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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