Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB83471.1PFAM: Isocitrate lyase/phosphorylmutase; KEGG: reu:Reut_B4841 2,3-dimethylmalate lyase. (284 aa)    
Predicted Functional Partners:
AEB84475.1
TIGRFAM: 2-methylcitrate synthase/citrate synthase type I; KEGG: ajs:Ajs_1635 methylcitrate synthase; PFAM: Citrate synthase-like; Belongs to the citrate synthase family.
 
 
 0.843
AEB83473.1
Homoaconitate hydratase family protein; KEGG: xtr:100490803 isopropylmalate/citramalate isomerase large subunit-like; TIGRFAM: Homoaconitase/3-isopropylmalate dehydratase, large subunit, subgroup; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha.
  
  
 0.790
AEB83472.1
KEGG: reu:Reut_B4842 3-isopropylmalate dehydratase, small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit, subgroup; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel; Belongs to the LeuD family.
     
 0.785
AEB83474.1
KEGG: xtr:100490977 UPF0065 protein in tcbD-tcbE intergenic region-like.
     
 0.780
AEB84578.1
KEGG: dia:Dtpsy_2288 type II citrate synthase; TIGRFAM: Citrate synthase, type II; PFAM: Citrate synthase-like; Belongs to the citrate synthase family.
  
 
 0.648
AEB85554.1
PFAM: Citrate synthase-like; KEGG: rme:Rmet_4144 citrate synthase.
  
 
 0.644
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
   
 
 0.642
AEB86258.1
MmgE/PrpD family protein; PFAM: MmgE/PrpD; KEGG: vei:Veis_4268 MmgE/PrpD family protein.
 
  
 0.595
AEB83446.1
MmgE/PrpD family protein; PFAM: MmgE/PrpD; KEGG: bpt:Bpet0850 hypothetical protein.
 
  
 0.594
AEB83929.1
MmgE/PrpD family protein; PFAM: MmgE/PrpD; KEGG: bpa:BPP0622 hypothetical protein.
 
  
 0.575
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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