Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
AEB83475.1KEGG: dia:Dtpsy_2779 Smr protein/MutS2; PFAM: Smr protein/MutS2 C-terminal; SMART: Smr protein/MutS2 C-terminal. (216 aa)    
Predicted Functional Partners:
AEB83476.1
KEGG: dia:Dtpsy_2778 hypothetical protein.
       0.829
AEB83477.1
KEGG: ajs:Ajs_3450 DNA repair protein RadC; TIGRFAM: Uncharacterised protein family UPF0758; PFAM: Uncharacterised protein family UPF0758; Belongs to the UPF0758 family.
       0.790
AEB83478.1
PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; KEGG: dia:Dtpsy_2776 peptidylprolyl isomerase FKBP-type.
 
     0.714
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
 
 
   0.709
AEB84351.1
Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
  
 
   0.702
rplX
Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.
  
 
   0.693
rpsU
TIGRFAM: Ribosomal protein S21; HAMAP: Ribosomal protein S21; KEGG: vap:Vapar_3540 30S ribosomal protein S21; PFAM: Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
 
   0.690
rpsJ
30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
   
 
 0.677
rplT
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
   
 
 0.674
rpmI
KEGG: aav:Aave_2857 50S ribosomal protein L35; TIGRFAM: Ribosomal protein L35, non-mitochondrial; PFAM: Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
   
 
 0.674
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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