Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
trpStryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family. (434 aa)    
Predicted Functional Partners:
AEB83019.1
Transport-associated protein; KEGG: ajs:Ajs_0533 peptidoglycan-binding LysM; PFAM: Transport-associated; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup.
  
 
 0.887
AEB86911.1
KEGG: ajs:Ajs_4050 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup.
  
 
 0.887
AEB86308.1
KEGG: aba:Acid345_0855 hypothetical protein.
  
 
 0.854
AEB83501.1
PFAM: Peptidase M50; KEGG: dia:Dtpsy_2770 peptidase M50.
       0.834
AEB86317.1
KEGG: cag:Cagg_1504 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02241, phage tail region protein; PFAM: Bacteriophage T4, Gp19, tail tube.
   
 
 0.821
AEB86304.1
GPW/gp25 family protein; PFAM: GPW/gp25; KEGG: cag:Cagg_1491 gpW/GP25 family protein.
   
 
 0.812
AEB86307.1
KEGG: nde:NIDE2231 hypothetical protein.
   
   0.794
AEB86302.1
TIGRFAM: Conserved hypothetical protein CHP02243; KEGG: bra:BRADO4376 hypothetical protein.
   
 
 0.785
AEB86303.1
TIGRFAM: Conserved hypothetical protein CHP02243; KEGG: chl:Chy400_2341 hypothetical protein.
   
 
 0.785
AEB84399.1
KEGG: dia:Dtpsy_3205 hypothetical protein.
   
 
 0.783
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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