Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AEB83510.1PFAM: Cytochrome c, class I; KEGG: dia:Dtpsy_0985 cytochrome c class I. (100 aa)    
Predicted Functional Partners:
AEB86145.1
PFAM: Cytochrome c, class I; KEGG: dia:Dtpsy_2961 cytochrome c class I.
    
 0.912
AEB86629.1
KEGG: azc:AZC_0960 cytochrome c; manually curated; PFAM: Cytochrome c, class I.
    
 0.912
AEB84717.1
KEGG: dia:Dtpsy_1716 hypothetical protein.
  
  
 0.836
AEB83771.1
Nitrous oxide expression regulator, NosR; KEGG: dia:Dtpsy_1059 FMN-binding domain protein; PFAM: FMN-binding; SMART: FMN-binding.
  
  
 0.799
AEB84714.1
KEGG: ajs:Ajs_1907 AsnC family transcriptional regulator.
  
  
 0.775
AEB84715.1
Hypothetical protein; KEGG: dia:Dtpsy_1714 putative transcriptional regulator, AsnC family.
  
  
 0.775
AEB83772.1
KEGG: ajs:Ajs_1139 nitrous-oxide reductase; PFAM: Cytochrome c oxidase subunit II C-terminal.
  
  
 0.766
AEB83098.1
PFAM: Oxidoreductase, molybdopterin-binding domain; KEGG: ctt:CtCNB1_4018 oxidoreductase, molybdopterin binding protein.
   
 
 0.761
msrP
Oxidoreductase molybdopterin binding protein; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to [...]
   
 
 0.761
AEB82557.1
KEGG: dia:Dtpsy_0109 nitric oxide reductase large subunit.
  
  
 0.653
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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