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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB83604.1PFAM: General secretion pathway, GspH; KEGG: ajs:Ajs_3182 putative type-4 fimbrial pilin related signal peptide protein. (168 aa)    
Predicted Functional Partners:
AEB83603.1
TIGRFAM: Pilus modification type IV, PilV; Prepilin-type cleavage/methylation, N-terminal; KEGG: dac:Daci_5194 type IV pilus modification protein PilV.
 
  
 0.959
AEB83602.1
KEGG: dac:Daci_5195 hypothetical protein.
 
  
 0.894
AEB83600.1
PFAM: PilC domain; KEGG: dac:Daci_5197 FG-GAP repeat-containing protein.
 
  
 0.891
AEB83601.1
KEGG: dac:Daci_5196 hypothetical protein.
  
  
 0.872
AEB83599.1
KEGG: dia:Dtpsy_2540 fimbrial protein pilin.
 
  
 0.818
AEB86717.1
KEGG: mep:MPQ_2531 pyrrolo-quinoline quinone; PFAM: Pyrrolo-quinoline quinone repeat; SMART: Pyrrolo-quinoline quinone beta-propeller repeat.
 
  
 0.766
AEB85535.1
PFAM: Type IV pilus assembly PilZ; KEGG: dia:Dtpsy_1985 type IV pilus assembly PilZ.
  
   
 0.641
AEB86715.1
KEGG: lch:Lcho_2907 type IV pilus assembly protein PilW.
 
  
 0.626
AEB86712.1
KEGG: har:HEAR3117 putative type 4 fimbrial biogenesis transmembrane protein.
 
  
 0.590
AEB86713.1
KEGG: lch:Lcho_2905 Tfp pilus assembly protein FimT.
  
     0.573
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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