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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB83615.1KEGG: aav:Aave_1563 GntR family transcriptional regulator; PFAM: Aminotransferase, class I/classII. (397 aa)    
Predicted Functional Partners:
AEB86555.1
PFAM: Aminotransferase, class I/classII; KEGG: ajs:Ajs_3845 GntR family transcriptional regulator.
  
  
 
0.910
AEB83616.1
SlyX family protein; PFAM: SlyX; KEGG: dia:Dtpsy_2515 SlyX family protein.
       0.784
AEB83617.1
PFAM: NADP-dependent oxidoreductase domain; KEGG: ajs:Ajs_3167 aldo/keto reductase.
     
 0.579
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
 
      0.574
AEB83619.1
KEGG: dia:Dtpsy_2512 hypothetical protein.
       0.573
AEB83618.1
PFAM: Copper resistance D; KEGG: ajs:Ajs_3166 hypothetical protein.
       0.572
AEB83614.1
Transcription activator effector binding protein; KEGG: dac:Daci_3099 AraC family transcriptional regulator; PFAM: Bacterial transcription activator, effector binding; SMART: Bacterial transcription activator, effector binding.
       0.539
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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