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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB83624.1UPF0229 protein yeaH; KEGG: dac:Daci_2328 hypothetical protein; HAMAP: Uncharacterised protein family UPF0229; PFAM: Uncharacterised protein family UPF0229; Belongs to the UPF0229 family. (422 aa)    
Predicted Functional Partners:
AEB83625.1
SpoVR family protein; PFAM: Sporulation stage V, protein R; KEGG: dac:Daci_2329 SpoVR family protein.
 
  
 0.996
AEB83623.1
KEGG: ctt:CtCNB1_1949 putative serine protein kinase, PrkA; PFAM: PrkA AAA; PrkA serine kinase; SMART: PrkA AAA.
 
  
 0.994
AEB83733.1
KEGG: dia:Dtpsy_2563 PhoH family protein; PFAM: PhoH-like protein; SMART: Nucleotide binding protein, PINc.
   
    0.499
AEB84769.1
PFAM: Protein of unknown function DUF883, ElaB; KEGG: dia:Dtpsy_1647 protein of unknown function DUF883 ElaB.
   
    0.495
AEB84770.1
KEGG: dia:Dtpsy_1648 hypothetical protein.
   
    0.410
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
   
    0.404
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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