STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB83693.1Glutamine--scyllo-inositol transaminase; KEGG: mpt:Mpe_A0607 lipopolysaccharide biosynthesis protein; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (390 aa)    
Predicted Functional Partners:
AEB83699.1
PFAM: Polysaccharide biosynthesis protein CapD-like; KEGG: pol:Bpro_3983 polysaccharide biosynthesis protein CapD.
 
  
 0.991
AEB83692.1
PFAM: Bacterial sugar transferase; KEGG: lch:Lcho_0300 sugar transferase.
  
 0.964
AEB83697.1
Acetyltransferase; KEGG: bpt:Bpet1526 acetyltransferase.
 
  
 0.949
AEB83698.1
PFAM: Polysaccharide biosynthesis protein; KEGG: bpt:Bpet1527 hypothetical protein.
 
  
 0.934
AEB83695.1
PFAM: Glycosyl transferase, family 2; KEGG: bpt:Bpet1524 glycosyltransferase.
 
   
 0.871
AEB83696.1
PFAM: Glycosyl transferase, group 1; KEGG: bpt:Bpet1525 glycosyltransferase.
 
  
 0.865
AEB83127.1
Manually curated; TIGRFAM: Nucleotide sugar dehydrogenase; KEGG: reu:Reut_B5375 UDP-glucose/GDP-mannose dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.854
AEB83694.1
PFAM: Methyltransferase type 11; KEGG: mpt:Mpe_A0605 hypothetical protein.
 
  
 0.832
AEB83025.1
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.731
lysS
TIGRFAM: Lysyl-tRNA synthetase, class II; KEGG: ajs:Ajs_3250 lysyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
   0.724
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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